Drkcore

11 10 2006 bioinformatics Tweet

InSilicoSpectro

プロテオミクス関係のモジュールがCPANに登場しました。

  • Mass list file format conversions.
  • Protein modifications.
  • Protein sequences digestion with a large choice of possible enzyme types.
  • Peptide mass computations with fixed and variable modifications. Match with experimental PMF data.
  • Fragment mass computations for modified peptides and with neutral losses. Match with experimental MS/MS data. Possibility to define new types of fragments.
  • Text/graphical output in many formats of MS/MS spectra and match with experimental data.
  • Peptide HPLC elution time prediction.
  • Protein pI estimation.

pIは別にEMBOSSでも予測できるんだけどHPLC周りとかMS/MSなんかちょっと気になりますな。あとphenyxともなにが違うのかも気になるヨ

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